A slight vibration in gear when stopped at a light is normal. Especially with ancillary draw on the engine, like the A/C running. If the hood is vibrating a lot, you may need to adjust the bumpers underneath it. There are a few along the front of the engine bay, along the radiator support, and a few on the sides near the back of the engine bay. They have a rubber top on them and you can screw them down to lower or up to raise. They should touch the underside of the hood when it's closed, but not prevent it from closing fully. There were a lot of threads on this some time back.
I notice on my 2014 that when the engine is cold, I get more vibration in gear stopped at lights. Once warmed up it lessens. I've always considered it to be a function of the PCM "choke" setting that slightly elevates idle RPM until the engine reaches operating temp. Once warmed up my Patriot idles around 100 RPM or so less than when it's "cold".