The CVT used to have an advantage in that the limited lifetime powertrain warranty covered it and didn't cover the clutch on the five speed manual. My 1987 Cherokee had the original clutch in it when I sold it with 145,000 miles, so I hope to get good life out of the clutch in my Patriot.
If I had it to do over again, I might get the CVT. With the manual control of the CVT, the left right shift thingy, I seem to recall that it had about six speeds available. There seems to be a bit more gap between 4th and 5th than I like with the manual and sometimes I want to upshift from 5th, but there is no 6th.
If I were to be buying another Patriot, I'd look closely at the CVT. Plus, my wife could drive it.